Galperin, Eugene: search on Z-Library

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1

Phylogenomic Analysis of the Giardia intestinalis Transcarboxylase Reveals Multiple Instances of Domain Fusion and Fission in the Evolution of Biotin-Dependent Enzymes

King Jordan, I., Henze, Katrin, Fedorova, Natalie D., Koonin, Eugene V., Galperin, Michael Y.

Journal:

Journal of Molecular Microbiology and Biotechnology

Year:

2003

Language:

english

File:

PDF, 543 KB

english, 2003

2

Thermally Stable UV Crosslinkable Copolyesters: Synthesis, Crosslinking, and Characterization of Poly(1,4-cyclohexylenedimethylene−1,4-cyclohexane dicarboxylate- co -4,4′-stilbene dicarboxylate)

Montgomery, Steven J., Kannan, Ganesh, Galperin, Eugene, Kim, Sung Dug

Journal:

Year:

2010

Language:

english

File:

PDF, 1.61 MB

english, 2010

3

Sequence analysis of an exceptionally conserved operon suggests enzymes for a new link between histidine and purine biosynthesis

Michael Y. Galperin, Eugene V. Koonin

Journal:

Molecular Microbiology

Year:

1997

Language:

english

File:

PDF, 661 KB

english, 1997

4

Planctomycetes and eukaryotes: A case of analogy not homology

James O. McInerney, William F. Martin, Eugene V. Koonin, John F. Allen, Michael Y. Galperin, Nick Lane, John M. Archibald, T. Martin Embley

Journal:

Year:

2011

Language:

english

File:

PDF, 115 KB

english, 2011

5

Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea

Eugene V. Koonin, Arcady R. Mushegian, Michael Y. Galperin, D. Roland Walker

Journal:

Molecular Microbiology

Year:

1997

Language:

english

File:

PDF, 1.22 MB

english, 1997

6

Comparative genomic analysis of evolutionarily conserved but functionally uncharacterized membrane proteins in archaea: Prediction of novel components of secretion, membrane remodeling and glycosylation systems

Makarova, Kira S., Galperin, Michael Y., Koonin, Eugene V.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.09 MB

english, 2015

7

Dimeric dUTPases, HisE, and MazG belong to a New Superfamily of all-α NTP Pyrophosphohydrolases with Potential “House-cleaning” Functions

Olga V. Moroz, Alexey G. Murzin, Kira S. Makarova, Eugene V. Koonin, Keith S. Wilson, Michael Y. Galperin

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 2.29 MB

english, 2005

8

Novel domains of the prokaryotic two-component signal transduction systems

Michael Y. Galperin, Anastasia N. Nikolskaya, Eugene V. Koonin

Journal:

FEMS Microbiology Letters

Year:

2001

Language:

english

File:

PDF, 742 KB

english, 2001

9

Sequence — Evolution — Function || Evolution of Central Metabolic Pathways: The Playground of Non-orthologous Gene Displacement

Koonin, Eugene V., Galperin, Michael Y.

Year:

2003

Language:

english

File:

PDF, 6.92 MB

english, 2003

10

[ACM Press the second annual international conference - New York, New York, United States (1998.03.22-1998.03.25)] Proceedings of the second annual international conference on Computational molecular biology - RECOMB '98 - Genome analysis using clusters of orthologous groups (COGs)

Koonin, Eugene V., Tatusov, Roman L., Galperin, Michael Y., Rosanov, Michael N.

Year:

1998

Language:

english

File:

PDF, 474 KB

english, 1998

11

Open Questions on the Origin of Life at Anoxic Geothermal Fields

Armen Y. Mulkidjanian, Andrew Yu. Bychkov, Daria V. Dibrova, Michael Y. Galperin, Eugene V. Koonin

Journal:

Origins of Life and Evolution of Biospheres

Year:

2012

Language:

english

File:

PDF, 167 KB

english, 2012

12

Sequence — Evolution — Function ||

Koonin, Eugene V., Galperin, Michael Y.

Year:

2003

Language:

english

File:

PDF, 51.95 MB

english, 2003

13

Non-homologous isofunctional enzymes: A systematic analysis of alternative solutions in enzyme evolution

Marina V Omelchenko, Michael Y Galperin, Yuri I Wolf, Eugene V Koonin

Journal:

Year:

2010

Language:

english

File:

PDF, 986 KB

english, 2010

14

Microbial genome analysis: the COG approach

Galperin, Michael Y., Kristensen, David M., Makarova, Kira S., Wolf, Yuri I., Koonin, Eugene V.

Journal:

Briefings in Bioinformatics

Year:

2017

Language:

english

File:

PDF, 444 KB

english, 2017

15

Corrigendum to “Novel domains of the prokaryotic two-component signal transduction systems”: [FEMS Microbiol. Lett. 203 (2001) 11–21]

Michael Y. Galperin, Anastasia N. Nikolskaya, Eugene V. Koonin

Journal:

FEMS Microbiology Letters

Year:

2001

Language:

english

File:

PDF, 136 KB

english, 2001

16

Evolutionary primacy of sodium bioenergetics

Armen Y Mulkidjanian, Michael Y Galperin, Kira S Makarova, Yuri I Wolf, Eugene V Koonin

Journal:

Year:

2008

Language:

english

File:

PDF, 3.19 MB

english, 2008

17

Corrigendum to “Novel domains of the prokaryotic two-component signal transduction systems” : [FEMS Microbiol. Lett. 203 (2001) 11–21]

Michael Y. Galperin, Anastasia N. Nikolskaya, Eugene V. Koonin

Journal:

FEMS Microbiology Letters

Year:

2001

Language:

english

File:

PDF, 134 KB

english, 2001

18

COG database update: focus on microbial diversity, model organisms, and widespread pathogens

Galperin, Michael Y, Wolf, Yuri I, Makarova, Kira S, VeraÂ Alvarez, Roberto, Landsman, David, Koonin, Eugene V

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 304 KB

2020

19

Beyond complete genomes: from sequence to structure and function

Eugene V Koonin, Roman L Tatusov, Michael Y Galperin

Journal:

Current Opinion in Structural Biology

Year:

1998

Language:

english

File:

PDF, 835 KB

english, 1998

20

New metrics for comparative genomics

Michael Y Galperin, Eugene Kolker

Journal:

Current Opinion in Biotechnology

Year:

2006

Language:

english

File:

PDF, 1.89 MB

english, 2006

21

A superfamily of metalloenzymes unifies phosphopentomutase and cofactor-independent phosphoglycerate mutase with alkaline phosphatases and sulfatases

Michael Y. Galperin, Eugene V. Koonin, Amos Bairoch

Journal:

Protein Science

Year:

1998

Language:

english

File:

PDF, 2.98 MB

english, 1998

22

Novel domains of the prokaryotic two-component signal transduction systems

Michael Y. Galperin, Anastasia N. Nikolskaya, Eugene V. Koonin

Journal:

FEMS Microbiology Letters

Year:

2001

Language:

english

File:

PDF, 739 KB

english, 2001

23

Aldolases of the DhnA family: a possible solution to the problem of pentose and hexose biosynthesis in archaea

Michael Y. Galperin, L. Aravind, Eugene V. Koonin

Journal:

FEMS Microbiology Letters

Year:

2000

Language:

english

File:

PDF, 684 KB

english, 2000

24

Independent Evolution of Heavy Metal-Associated Domains in Copper Chaperones and Copper-Transporting ATPases

I. King Jordan, Darren A. Natale, Eugene V. Koonin, Michael Y. Galperin

Journal:

Journal of Molecular Evolution

Year:

2001

Language:

english

File:

PDF, 2.75 MB

english, 2001

25

Aldolases of the DhnA family: a possible solution to the problem of pentose and hexose biosynthesis in archaea

Michael Y. Galperin, L. Aravind, Eugene V. Koonin

Journal:

FEMS Microbiology Letters

Year:

2000

Language:

english

File:

PDF, 682 KB

english, 2000

26

Searching for drug targets in microbial genomes

Michael Y Galperin, Eugene V Koonin

Journal:

Current Opinion in Biotechnology

Year:

1999

Language:

english

File:

PDF, 279 KB

english, 1999

27

Interplay of heritage and habitat in the distribution of bacterial signal transduction systems

Galperin, Michael Y., Higdon, Roger, Kolker, Eugene

Journal:

Molecular BioSystems

Year:

2010

Language:

english

File:

PDF, 2.00 MB

english, 2010

28

A diverse superfamily of enzymes with ATP-dependent carboxylate—amine/thiol ligase activity

Michael Y. Galperin, Eugene V. Koonin

Journal:

Protein Science

Year:

1997

Language:

english

File:

PDF, 3.23 MB

english, 1997

29

Inventing the dynamo machine: the evolution of the F-type and V-type ATPases

Mulkidjanian, Armen Y., Makarova, Kira S., Galperin, Michael Y., Koonin, Eugene V.

Journal:

Nature Reviews Microbiology

Year:

2007

Language:

english

File:

PDF, 522 KB

english, 2007

30

Prokaryotic genomes: the emerging paradigm of genome-based microbiology

Eugene V Koonin, Michael Y Galperin

Journal:

Current Opinion in Genetics & Development

Year:

1997

Language:

english

File:

PDF, 517 KB

english, 1997

31

Comparative analysis of lipid biosynthesis in archaea, bacteria and eukaryotes: What was the structure of the first membrane lipids?

Dibrova, Daria V., Makarova, Kira S., Galperin, Michael Y., Koonin, Eugene V., Mulkidjanian, Armen Y.

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

2012

Language:

english

File:

PDF, 115 KB

english, 2012

32

Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes

Boris G Mirkin, Trevor I Fenner, Michael Y Galperin, Eugene V Koonin

Journal:

BMC Evolutionary Biology

Year:

2003

Language:

english

File:

PDF, 3.10 MB

english, 2003

33

The Role of Energy in the Emergence of Biology from Chemistry

Daria V. Dibrova, Michail Y. Chudetsky, Michael Y. Galperin, Eugene V. Koonin, Armen Y. Mulkidjanian

Journal:

Origins of Life and Evolution of Biospheres

Year:

2012

Language:

english

File:

PDF, 168 KB

english, 2012

34

Phyletic distribution and lineage-specific domain architectures of archaeal two-component signal transduction systems

Galperin, Michael Y., Makarova, Kira S., Wolf, Yuri I., Koonin, Eugene V.

Journal:

Journal of Bacteriology

Year:

2017

Language:

english

File:

PDF, 1.41 MB

english, 2017

35

Co-evolution of primordial membranes and membrane proteins

Armen Y. Mulkidjanian, Michael Y. Galperin, Eugene V. Koonin

Journal:

Trends in Biochemical Sciences

Year:

2009

Language:

english

File:

PDF, 511 KB

english, 2009

36

The catalytic domain of the P-type ATPase has the haloacid dehalogenase fold

L Aravind, Michael Y Galperin, Eugene V Koonin

Journal:

Trends in Biochemical Sciences

Year:

1998

Language:

english

File:

PDF, 791 KB

english, 1998

37

C1/2 Energetics of the first bacteria as inferred from genome analysis

Michael Y. Galperin, Eugene V. Koonin, Kira S. Makarova, Armen Y. Mulkidjanian

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

2008

Language:

english

File:

PDF, 63 KB

english, 2008

38

Proposed Role for KaiC-Like ATPases as Major Signal Transduction Hubs in Archaea

Makarova, Kira S., Galperin, Michael Y., Koonin, Eugene V., Zhulin, Igor B.

Journal:

Year:

2017

Language:

english

File:

PDF, 3.78 MB

english, 2017

39

From complete genome sequence to ‘complete’ understanding?

Michael Y. Galperin, Eugene V. Koonin

Journal:

Trends in Biotechnology

Year:

2010

Language:

english

File:

PDF, 246 KB

english, 2010

40

Complete genome sequence of the extremely acidophilic methanotroph isolate V4,Methylacidiphilum infernorum, a representative of the bacterial phylumVerrucomicrobia

Shaobin Hou, Kira S Makarova, Jimmy HW Saw, Pavel Senin, Benjamin V Ly, Zhemin Zhou, Yan Ren, Jianmei Wang, Michael Y Galperin, Marina V Omelchenko, Yuri I Wolf, Natalya Yutin, Eugene V Koonin, Matthe

Journal:

Year:

2008

Language:

english

File:

PDF, 3.65 MB

english, 2008

41

Who's your neighbor? New computational approaches for functional genomics

Galperin, Michael Y., Koonin, Eugene V.

Journal:

Nature Biotechnology

Year:

2000

Language:

english

File:

PDF, 198 KB

english, 2000

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